CellCellScatter

Scatter plot of a single cell-cell vector, involving features of interest. Returns a ggplot object, colored by mechanism. Points are labeled if above label.threshold on both x- and y-axes.

CellCellScatter(
  connectome,
  sources.include,
  targets.include,
  label.threshold = 1,
  weight.attribute = "weight_sc",
  ...
)

Arguments

connectome

A connectomic edgelist
sources.include

Source nodes of interest. Output will be limited to edges coming from these sources.
targets.include

Target nodes of interest. Output will be limited to edges landing on these targets.
label.threshold

Threshold for labeling of plot, applied to both x- and y- axes. Defaults to 1.
weight.attribute

Column to use to define edgeweights for network analysis. 'weight_sc or weight_norm'. Defaults to 'weight_sc'
...

Arguments passed to FilterConnectome