lr_load.Rdload the Ligands and Receptors that corresponds to the row names of the input seurat
lr_load(LR.database, custom_LR_database = NULL, species, input_rownames)
| LR.database | database to use |
|---|---|
| custom_LR_database | data.frame. Each row is a ligand-receptor mechanism where the first column corresponds to the source genes that express the ligands subunits (separated by '_') and the second column corresponds to the receptor genes that express the receptor subunits (separated by '_'). |
| species | species in the database (fantom5 or omnipath) to use |
| input_rownames | the genes names to query |
a list of ligands and receptors